|
|
Detection of viral and atypical pathogens in children with lower respiratory tract infection by multiple PCR technique |
ZHANG Hailin1, CHEN Xiaofang1, LYU Fangfang1, ZHONG Peipei1, CHEN Bo2, XU Zhi2, DONG Lin1. |
1.Department of Pediatric Pulmonology, the Second Affiliated Hospital & Yuying Children’s Hospital of Wenzhou Medical University, Wenzhou, 325027; 2.Ningbo Health Gene Technologies Co., Ltd., Ningbo, 315040 |
|
Cite this article: |
ZHANG Hailin,CHEN Xiaofang,LYU Fangfang, et al. Detection of viral and atypical pathogens in children with lower respiratory tract infection by multiple PCR technique[J]. JOURNAL OF WEZHOU MEDICAL UNIVERSITY, 2017, 47(11): 791-795,800.
|
|
Abstract Objective: To understand the distribution of viruses and atypical pathogens in children’s lower respiratory tract infections (LRTI), and to investigate the clinical value of multiplex PCR technique. Methods: Nasopharyngeal secretions of 992 children under 5 years old who were hospitalized for LRTI in the Second Affiliated Hospital & Yuying Children’s Hospital of Wenzhou Medical University were collected, from January 2014 to December 2014. Direct immunofluorescence assay was used to detect respiratory syncytial virus (RSV), influenza virus A, influenza virus B, parainfluenza virus, adenovirus and Chlamydia antigen, and extract nucleic acid. Use multiple PCR method based on advanced fragment analysis to detect RSV, influenza A virus, influenza virus B, parainfluenza virus, adenovirus, human rhinovirus (HRV), bocavirus, human metapneumovirus, coronavirus, mycoplasma pneumonia and Chlamydia gene. Results: There were 662 males and 330 females, 587 were in <1 year old group, 287 were in 1-3 years old group, 118 were in 3-5 years old group, the median age was 10 month. By using multiple PCR method, nasopharyngeal secretions from 851 patients were detected at least one pathogen (85.8%), 224 detected two or more than two pathogens (22.6%). RSV and HRV accounted for the top two of all detected pathogens, and the positive rates of pathogens in different groups were 84.8%, 89.2% and 82.2%, there was no significant difference between the three groups (χ2=4.416, P=0.110). However, the mixed infection rates in <1 year old group and 1-3 year old group were significantly higher than 3-5 year old group (χ2=3.963 and 9.871, P=0.047 and 0.002). As for LRTI children, HRV can be detected of all ages, while RSV is mainly in infants. Compared with immunofluorescence, the consistency of the same pathogen detection is good (Kappa=0.615, P<0.01), but multiple PCR method was better for detecting other pathogens (58.37% vs. 41.53%, χ2=56.23, P<0.001). Conclusion: RSV and HRV are the first two of the major virus and atypical pathogens of LRTI in children under 5 years old in this region. Bocavirus, coronavirus, and human metapneumovirus can also be detected, mycoplasma was rare. Compared with the direct immunofluorescence method, multiple PCR is helpful in comprehensive understanding the etiology of LRTI in children.
|
Received: 08 March 2017
|
|
|
|
|
[1] 刘春艳, 肖艳, 谢正德, 等. 2010至2012年门诊和住院儿童急性呼吸道感染病毒病原比较分析[J]. 中华儿科杂志, 2013, 51(4): 255-259.
[2] FENG L, LI Z, ZHAO S, et al. Viral etiologies of hospitalized acute lower respiratory infection patients in China, 2009-2013[J]. PLoS One, 2014, 9(6): e99419.
[3] WANG Y, HAO C, JI W, et al. Bronchiolitis associated with Mycoplasma pneumoniae in infants in Suzhou China between 2010 and 2012[J]. Sci Rep, 2015, 5: 7846.
[4] 张海邻, 陈志敏, 刘瀚旻, 等. 肺炎支原体感染的致病机制[J]. 中华儿科杂志, 2016, 54(2): 94-97.
[5] 李瑾, 申红卫, 秦萌, 等. 新型多重PCR方法及其在呼吸道病毒诊断上的应用[J]. 病毒学报, 2013, 29(6): 638-645.
[6] 胡亚美, 江载芳. 诸福棠实用儿科学[M]. 7版. 北京: 人民卫生出版社, 2002: 1171-1185.
[7] PAWEłCZYK M, KOWALSKI M L. The role of human parainfluenza virus infections in the immunopathology of the respiratory tract[J]. Curr Allergy Asthma Rep, 2017, 17 (3): 16.
[8] 常洁, 李春云, 李海静, 等. 2007~2008年温州地区急性呼吸道感染病毒病原学研究[J]. 中国当代儿科杂志, 2010, 12(1): 32-34.
[9] GREENBERG S B. Update on Human Rhinovirus and Coronavirus Infections[J]. Semin Respir Crit Care Med, 2016, 37(4): 555-571.
[10] DRYSDALE S B, ALCAZAR M, WILSON T, et al. Functional and genetic predisposition to rhinovirus lower respiratory tract infections in prematurely born infants[J]. Eur J Pediatr, 2016, 175(12): 1943-1949.
[11] ASNER S A, SCIENCE M E, TRAN D, et al. Clinical disease severity of respiratory viral co-infection versus single viral infection: a systematic review and meta-analysis[J]. PLoS One, 2014, 9(6): e99392.
[12] 刘晓红, 谢正德. 儿童急性呼吸道多病原体混合感染的研究进展[J]. 国际流行病学传染病学杂志, 2016, 43(1): 51-53.
[13] ZHANG H, CHENG H, WANG Q, et al. An advanced fragment analysis-based individualized subtype classification of pediatric acute lymphoblastic leukemia[J]. Sci Rep, 2015, 5: 12435.
[14] 王乐, 赵梦川, 石仲仁, 等. GeXP多重RT-PCR技术在儿童呼吸系统病毒感染病原体检测中的应用[J]. 中华检验医学杂志, 2015, 38(12): 852-856. |
[1] |
. [J]. JOURNAL OF WEZHOU MEDICAL UNIVERSITY, 2022, 52(6): 502-504. |
|
|
|
|